Denis Voronin

Denis VoroninTitle

Head, Cellular Microbiology Research Program
Assistant Member, Lindsley F. Kimball Research Institute

Contact Information

Email: dvoronin@nybc.org
Phone: +1 (212) 570-5229 / +1(212) 570-3181

Current Projects 

Human lymphatic filariasis and onchocerciasis are two of the most debilitating yet neglected infectious diseases. Combined, they afflict 150 million of “the poorest of the poor” worldwide. Lymphatic filariasis (elephantiasis) is the second leading cause of morbidity, and onchocerciasis (river blindness) – the second leading cause of infectious blindness. Wuchereria bancrofti and Brugia malayi are the causative agents of lymphatic filariasis and Onchocerca volvulus causes onchocerciasis. The filarial parasites have evolved a mutualistic association with the endosymbiotic bacteria, Wolbachia, an association that supports both organisms, none can survive without the other.  Wolbachia are crucial for the parasite’s development, fertility, and viability. It has been postulated that the mechanism(s) underlying the obligate interdependence between Wolbachia and filarial parasites relies on the ability of the bacteria and the parasite to share essential metabolites and biosynthetic processes (glycolysis, nucleotide biosynthesis, iron metabolism). These essential roles make Wolbachia a very attractive drug target for anti-filarial drug development. Moreover, investigating the gram-negative bacteria-eukaryotic cells symbiotic interactions may enable the translation of our study outcomes to also better understand bacterial infections in mammalian.

Wolbachia regulates B. malayi genes through manipulation of worm’s microRNAs

Most of what we know about Wolbachia derives from molecular studies performed in insect systems, because 70% of arthropods are parasitized by various Wolbachia strains, and a number of these strains can be cultured in insect cells. This is not the case for the Wolbachia of filarial worms. Noticeably, a recent study showed that to survive in the insect host, pathogenic Wolbachia (wMelPop) manipulate host microRNAs (miRNAs) to control arthropod gene expression. We therefore theorize that although the Wolbachia of filarial worms are mutualistic and not pathogenic as in insects, they could also manipulate host miRNA to control worm gene expression.

Our working hypothesis is the homeostasis of the mutualistic relationship between parasites and Wolbachia requires the coordinated regulation of parasite’s genes through Wolbachia-controlled filarial nematode’s miRNAs. In this project we will focus on 4 Wolbachia-controlled miRNAs and their filarial gene targets and validate the involvement of this specific subset of B. malayi genes in the mutualistic Wolbachia-Brugia association. Any druggable targets could be then tested in vitro and in vivo studies for their ability to affect the fitness of both Wolbachia and the worm.

Activation of autophagy and the elimination of Wolbachia by filarial parasites

Currently, only treatment with antibiotics (doxycycline) that kill endosymbiont has been shown to have macrofilaricidal effects – killing of adult worms. Unfortunately, both the dose of doxycycline and the time-course of treatment needed to be effective in humans are incredibly high and long: ≥100-200 mg/day for 4-6 weeks of treatment. Moreover, the antibiotic cannot be administered to children below the age of 8 and pregnant women, and since doxycycline is a broad spectrum antibiotic, widespread use of it could also promote the development of antibiotic resistant strains of other human pathogenic bacteria. Therefore, in this project we explore a novel approach for the elimination of Wolbachia: a host(parasite)-oriented treatment that induces the host’s innate defense and forces the filarial nematodes to eliminate their endosymbiont. Autophagy is a mechanism of eukaryotic cells that maintains a healthy intracellular environment and protects cells against intracellular invaders (bacteria, virus). We already have shown that Wolbachia load is dependent on the activity of autophagy in insect cells and in filarial nematodes. We will first study the mechanism by which the bacteria manipulate the host’s intracellular defense mechanisms in order to protect themselves and in parallel investigate the ways the parasite controls bacterial population to avoid host fitness cost. Discovering any vulnerable pathways will support such novel strategy to employ a host(parasite)-oriented treatment to eliminate Wolbachia from the filarial worms and consequently affect the survival of the adult parasites

Lab Personnel

  • Emily Schnall, MS, Research Assistant

Education and Training

Doctoral Training
PhD, Cellular Biology, Institute of Cytology and Genetics, Novosibirsk, Russia.

Postdoctoral Training
University of Lyon 1, Lyon, France

Liverpool School of Tropical Medicine, Liverpool, UK

Publications

https://www.ncbi.nlm.nih.gov/sites/myncbi/denis.voronin.1/bibliography/47365727/public/?sort=date&direction=descending

Key Publications

  1. Grote A, Voronin D, Ding T, Twaddle A, Unnasch TR, Lustigman S, Ghedin E. (2017) Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq. PLoS Neglected Tropical Diseases. 2017; 11(3):e0005357. PMID: 28358880
     
  2. Cotton JA, Bennuru S, Grote A, et al. (2016) The genome of Onchocerca volvulus, agent of river blindness. Nature Microbiology. 2016; 2:16216. PMID:27869790.
     
  3. Taylor MJ, Voronin D, Johnston KL, Ford L. (2013) Wolbachia filarial interactions.Cell Microbiol. (Review). 15(4):520-6. Picture was selected for the cover of the journal.
     
  4. Voronin D, Cook D, Steven A, Taylor MJ. (2012) Autophagy regulates Wolbachia populations across diverse symbiotic associations. Proc Natl Acad Sci USA (Jun 19), 109(25): E1638-1946 
     
  5. Mavingui P, Moro C, Van Tran V, Wisniewski-Dyé F, Raquin V, Minard G, Tran F, Voronin D, et al. (2012) Whole-Genome sequence of Wolbachia strain wAlbB, an endosymbiont of Tiger mosquito vector Aedes albopictus. J. of Bacteriology 194, 7
     
  6. Landmann F#, Voronin D#, Sullivan W, Taylor MJ. (2011) Anti-filarial activity of antibiotic therapy is due to extensive apoptosis after Wolbachia depletion from Filarial Nematodes. PLoS Pathog., 7(11):e1002351, # These authors contributed equally to this work
     
  7. Kremer N, Voronin D, Charif D, Mavingui P, Mollereau B, Vavre F. (2009, Oct) Wolbachia interferes with ferritin expression and iron metabolism in insects.PLoS Pathog., 5(10):e1000630